Chapter 3. Using

Table of Contents
3.1. List of packages present in the Bio Roll
3.2. HMMER
3.2.1. About
3.2.2. Usage
3.3. NCBI BLAST
3.3.1. About
3.3.2. Usage
3.3.3. Running Blast with SGE
3.3.4. Further Information
3.4. ClustalW
3.4.1. About
3.4.2. Using ClustalW
3.4.3. Further Information
3.5. EMBOSS
3.5.1. About
3.5.2. Further Information
3.6. Glimmer
3.6.1. About
3.6.2. Using Glimmer
3.6.3. Further Information
3.7. Fasta
3.7.1. About Fasta
3.7.2. Usage
3.7.3. Further Information
3.8. MrBayes
3.8.1. About
3.8.2. Usage
3.8.3. Further Information
3.9. Phylip
3.9.1. About
3.9.2. Further Information
3.10. T_Coffee
3.10.1. About
3.10.2. Usage
3.10.3. Further Information
3.11. TIGR Assembler v2
3.11.1. About
3.11.2. Usage
3.11.3. Further Information
3.12. MPI-Blast
3.12.1. About
3.12.2. Usage
3.12.3. Running MPI Blast and SGE
3.12.4. Further Information
3.13. GROMACS
3.13.1. About
3.13.2. Usage
3.14. Bioperl
3.14.1. About
3.14.2. Usage
3.14.3. Further Information
3.15. Biopython
3.15.1. About
3.15.2. Usage
3.15.3. Further Information