Bio Roll: Users Guide

Copyright © 2010 University of California

Table of Contents

1. Overview

2. Installing

2.1. On a New Server
2.2. On an Existing Server

3.1. List of packages present in the Bio Roll
3.2. HMMER
3.3. NCBI BLAST
3.4. ClustalW
3.5. EMBOSS
3.6. Glimmer
3.7. Fasta
3.8. MrBayes
3.9. Phylip
3.10. T_Coffee
3.11. TIGR Assembler v2
3.12. MPI-Blast
3.13. GROMACS
3.14. Bioperl
3.15. Biopython

A. Rocks Copyright

B. Third Party Copyrights and Licenses

B.1. Biopython
B.2. Clustal W
B.3. EMBOSS
B.4. FASTA
B.5. Glimmer
B.6. GROMACS
B.7. HMMER
B.8. mpiBlast
B.9. Mr.Bayes
B.10. NCBI
B.11. Perl Modules
B.12. Phylip
B.13. T_Coffee
B.14. TIGR Assembler

List of Tables
1-1. Summary
1-2. Roll Compatibility

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		Preface