Bio Users Guide

(PDF version)

Table of Contents
Preface
1. Overview
2. Installing
2.1. On a New Server
2.2. On an Existing Server
3. Using
3.1. List of packages present in the Bio Roll
3.2. HMMER
3.3. NCBI BLAST
3.4. ClustalW
3.5. EMBOSS
3.6. Glimmer
3.7. Fasta
3.8. MrBayes
3.9. Phylip
3.10. T_Coffee
3.11. TIGR Assembler v2
3.12. MPI-Blast
3.13. GROMACS
3.14. Bioperl
3.15. Biopython
A. Rocks® Copyright
B. Third Party Copyrights and Licenses
B.1. Biopython
B.2. Clustal W
B.3. EMBOSS
B.4. FASTA
B.5. Glimmer
B.6. GROMACS
B.7. HMMER
B.8. mpiBlast
B.9. Mr.Bayes
B.10. NCBI
B.11. Perl Modules
B.12. Phylip
B.13. T_Coffee
B.14. TIGR Assembler
List of Tables
1-1. Summary
1-2. Compatibility