Bio
Users Guide
Copyright
© 2011 University of California
(PDF version)
Table of Contents
Preface
1.
Overview
2.
Installing
2.1.
On a New Server
2.2.
On an Existing Server
3.
Using
3.1.
List of packages present in the Bio Roll
3.2.
HMMER
3.3.
NCBI BLAST
3.4.
ClustalW
3.5.
EMBOSS
3.6.
Glimmer
3.7.
Fasta
3.8.
MrBayes
3.9.
Phylip
3.10.
T_Coffee
3.11.
TIGR Assembler v2
3.12.
MPI-Blast
3.13.
GROMACS
3.14.
Bioperl
3.15.
Biopython
A.
Rocks
® Copyright
B.
Third Party Copyrights and Licenses
B.1.
Biopython
B.2.
Clustal W
B.3.
EMBOSS
B.4.
FASTA
B.5.
Glimmer
B.6.
GROMACS
B.7.
HMMER
B.8.
mpiBlast
B.9.
Mr.Bayes
B.10.
NCBI
B.11.
Perl Modules
B.12.
Phylip
B.13.
T_Coffee
B.14.
TIGR Assembler
List of Tables
1-1.
Summary
1-2.
Compatibility
Next
Preface