Bio Roll: Users Guide
Copyright
© 2008 University of California
(PDF version)
Table of Contents
Preface
1.
Overview
2.
Installing
2.1.
On a New Server
2.2.
On an Existing Server
3.
Using
3.1.
List of packages present in the Bio Roll
3.2.
HMMER
3.3.
NCBI BLAST
3.4.
ClustalW
3.5.
EMBOSS
3.6.
Glimmer
3.7.
Fasta
3.8.
MrBayes
3.9.
Phylip
3.10.
T_Coffee
3.11.
MPI-Blast
3.12.
GROMACS
3.13.
Bioperl
3.14.
Biopython
A.
Rocks Copyright
B.
Third Party Copyrights and Licenses
B.1.
Biopython
B.2.
Clustal W
B.3.
EMBOSS
B.4.
FASTA
B.5.
Glimmer
B.6.
GROMACS
B.7.
HMMER
B.8.
mpiBlast
B.9.
Mr.Bayes
B.10.
NCBI
B.11.
Perl Modules
B.12.
Phylip
B.13.
T_Coffee
List of Tables
1-1.
Summary
1-2.
Roll Compatibility
Next
Preface
